The bug where you sometimes go invisible when going through a door on your ship just hit me while I was extending ship buffs and I noticed another odd display deal with hookpoints:
The bug hit me and I went invisible going to the upper deck, but I didn't care since it's just a display glitch. While invisible I turned on hookpoints and they showed normally, all green squares accounted for. When I went down below, I became visible again but now the green squares disappeared. Hookpoints were still functional; I got the timers when I walked over them, but they weren't showing on the floor.
Going through a door again and both I and the hookpoints were visible.
Just figured if this helped to identify the problem maybe worth a post. Wasn't sure where debugging info went so tossed it in here.